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dc.rights.licenseAtribución-NoComercial 4.0 Internacional
dc.contributor.advisorLópez López, Karina
dc.contributor.advisorVaca Vaca, Juan Carlos
dc.contributor.authorCorredor Rodríguez, Andrea
dc.date.accessioned2020-08-18T16:15:10Z
dc.date.available2020-08-18T16:15:10Z
dc.date.issued2019-12-14
dc.identifier.citation(Morales et al., 1990)
dc.identifier.urihttps://repositorio.unal.edu.co/handle/unal/78065
dc.description.abstractEn los ecosistemas agrícolas las arvenses juegan un papel importante en la epidemiología viral como hospederas alternas de virus en la transitoriedad de los cultivos. El objetivo de este trabajo fue detectar e identificar begomovirus, potyvirus y cucumovirus en arvenses asociadas al cultivo de ají en el Valle del Cauca. Se analizaron 121 arvenses asintomáticas o con posibles síntomas de tipo viral, recolectadas en siete municipios ubicados en el norte, centro y sur del departamento. Se realizó la extracción de ácidos nucleicos (DNA y RNA), y se detectó la presencia de los virus mediante PCR y RT-PCR, empleando cebadores generales para cada género, y específicos para cada especie viral. Se realizó la amplificación y clonación de un fragmento begomoviral de aproximadamente 1,4 kb en el vector comercial pGEM. Luego, se realizó la transformación por choque térmico en E. coli, secuenciación y análisis bioinformáticos. Se detectaron begomovirus en el 21,5% de las muestras colectadas, potyvirus en el 20,6%, y cucumovirus en el 21,5%. Se identificaron los begomovirus, RhGMCV, PYMV/Co, PRMV y PLDV; en arvenses de las familias botánicas Compositae, Convolvulaceae, Cucurbitaceae, Euphorbiaceae, Leguminosae, Lythraceae, Malvaceae, Phytolaccaceae, Poaceae o Solanaceae. El potyvirus PepSMoV y el cucumovirus CMV-ají, fueron identificados en arvenses pertenecientes a las familias Amaranthaceae, Campanulaceae, Commelinaceae, Compositae, Leguminosae, Malvaceae, Nyctaginaceae, Phytolaccaceae, Solanaceae o Verbenaceae. También se encontraron infecciones simples y mixtas entre virus RNA y DNA. Adicionalmente, Panicum polygonatum se reporta como la primera especie monocotiledónea a nivel mundial en albergar begomovirus bipartitas. Por último, la caracterización parcial del begomovirus aislado en la arvense U-157 (Verbenaceae), indica que es una entidad begomoviral distinta a las reportadas en la actualidad a nivel mundial.
dc.description.abstractIn agricultural ecosystems weeds play an important role in viral epidemiology as alternate hosts of viruses in crop transience. The objective of this work was to detect and identify begomovirus, potyvirus and cucumovirus in weeds associated with the cultivation of chili pepper in the Valle del Cauca. 121 asymptomatic or possible viral weeds were analyzed, collected in seven municipalities located in the north, center and south of the department. Nucleic acid extraction (DNA and RNA) was performed, and the presence of viruses was detected by PCR and RT-PCR, using general and specific primers for each virus genus and species. The amplification and cloning of an approximately 1.4 kb begomoviral fragment was performed in the commercial vector pGEM. Then, heat shock transformation in E. coli, sequencing and bioinformatics analysis was performed. Begomoviruses were detected in 21.5% of the collected samples, potyvirus in 20.6%, and cucumovirus in 21.5%. begomoviruses, RhGMCV, PYMV / Co, PRMV and PLDV were identified; in weeds of the botanical families Compositae, Convolvulaceae, Cucurbitaceae, Euphorbiaceae, Leguminosae, Lythraceae, Malvaceae, Phytolaccaceae, Poaceae or Solanaceae. PepSMoV potyvirus and CMV-pepper cucumovirus were identified in weeds belonging to the Amaranthaceae, Campanulaceae, Commelinaceae, Compositae, Leguminosae, Malvaceae, Nyctaginaceae, Phytolaccaceae, Solanaceae or Verbenaceae families. Simple and mixed infections between RNA and DNA viruses were also found. Additionally, Panicum polygonatum is reported as the first monocot species in the world to house bipartite begomovirus. Finally, the partial characterization of the isolated begomovirus in the U-157 weed (Verbenaceae), indicates that it is a different begomoviral entity than those currently reported worldwide.
dc.description.sponsorshipCentro regional de Investigación en Bio-fotónica e Informática CIBIOFI - Universidad Nacional de Colombia sede Palmira
dc.format.extent123
dc.format.mimetypeapplication/pdf
dc.language.isospa
dc.rightsDerechos reservados - Universidad Nacional de Colombia
dc.rights.urihttp://creativecommons.org/licenses/by-nc/4.0/
dc.subject.ddc570 - Biología
dc.subject.ddc630 - Agricultura y tecnologías relacionadas
dc.titleDetección y caracterización molecular de begomovirus, potyvirus y cucumovirus presentes en arvenses asociadas al cultivo de ají (Capsicum spp.) en el Valle del Cauca
dc.typeDocumento de trabajo
dc.rights.spaAcceso abierto
dc.description.projectProyecto No. 7. IDENTIFICACIÓN TAXONÓMICA CON BASE MORFOLÓGICA Y MOLECULAR DE PLAGAS EN DIFERENTES CULTIVOS PRIORITARIOS DE CLASE MUNDIAL PARA CONTRIBUIR AL DISEÑO DE PLANES INTEGRADOS DE MANEJO O A LA OBTENCIÓN DE ESPECIES TOLERANTES. PROYECTO: CARACTERIZACIÓN MOLECULAR DE LA VIROSFERA PRESENTE EN PLANTAS ACOMPAÑANTES DEL CULTIVO DE AJÍ EN VALLE DEL CAUCA
dc.type.driverinfo:eu-repo/semantics/workingPaper
dc.type.versioninfo:eu-repo/semantics/publishedVersion
dc.publisher.programPalmira - Ciencias Agropecuarias - Maestría en Ciencias Biológicas
dc.contributor.researchgroupIPMA Interacción Planta -Microorganismo -Ambiente
dc.description.degreelevelMaestría
dc.publisher.departmentMaestría en Ciencias Biológicas
dc.publisher.branchUniversidad Nacional de Colombia - Sede Palmira
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dc.rights.accessrightsinfo:eu-repo/semantics/openAccess
dc.subject.proposalArvenses
dc.subject.proposalWeeds
dc.subject.proposalBegomovirus
dc.subject.proposalBegomovirus
dc.subject.proposalPotyvirus
dc.subject.proposalPotyvirus
dc.subject.proposalCucumovirus
dc.subject.proposalCucumovirus
dc.subject.proposalMixed infections
dc.subject.proposalInfecciones mixtas
dc.type.coarhttp://purl.org/coar/resource_type/c_93fc
dc.type.coarversionhttp://purl.org/coar/version/c_970fb48d4fbd8a85
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dc.type.redcolhttp://purl.org/redcol/resource_type/WP
oaire.accessrightshttp://purl.org/coar/access_right/c_abf2


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