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Análisis de la expresión de genes asociados con defensa en el modelo palma de aceite -thielaviopsis paradoxa (de seynes) höhn

dc.rights.licenseReconocimiento 4.0 Internacional
dc.contributor.advisorRomero Angulo, Hernán Mauricio
dc.contributor.advisorRiaño, Diego Mauricio
dc.contributor.authorGaitán Chaparro, Sandra Liliana
dc.date.accessioned2021-11-09T14:37:17Z
dc.date.available2021-11-09T14:37:17Z
dc.date.issued2021-08-28
dc.identifier.urihttps://repositorio.unal.edu.co/handle/unal/80667
dc.descriptiongráficas, ilustraciones, tablas
dc.description.abstractLa enfermedad de la pudrición de flecha en la palma de aceite, es causada por el hongo patógeno Thielaviopsis paradoxa. El híbrido OxG proporciona un valioso recurso genético para seleccionar el germoplasma resistente y establecer los genes asociados con resistencia a este patógeno. En este estudio, el híbrido OxG con código 517 fue identificado como un genotipo resistente que limitó la colonización de T. paradoxa, mientras que otro híbrido OxG con código 485 mostró alta susceptibilidad. Para comprender la respuesta transcripcional del híbrido a la infección por T. paradoxa, estos dos materiales del híbrido OxG se inocularon con este patógeno y se comparó su perfil transcripcional mediante secuenciación de ARN en seis puntos de tiempo (0, 24, 48, 72, 96 y 120 hpi). Para establecer los puntos de tiempo se realizó una caracterización del desarrollo de la enfermedad y se estableció una escala de severidad. Se detectaron 1798 genes expresados diferencialmente (DEG), incluidos 454 genes sobreexpresados y 86 subexpresados, en el híbrido 517, en comparación con el híbrido 485. Los perfiles de transcripción de veinte genes putativos relacionados con la defensa de la palma de aceite se midieron mediante transcripción inversa y PCR cuantitativa en la hoja de los híbridos de palma de aceite. Los genes están involucrados en los procesos de percepción y señales de transducción, generación y depuración de ROS, vía relacionada con fenilpropanoide, inhibidores proteasa serina, factores de transcripción, biosíntesis de fitohormonas (AJ y ET) y proteínas relacionadas con patogénesis. Los resultados mostraron un aumento en la expresión de estos genes dentro de las primeras 24 hpi en el híbrido 517 y que esta sobreexpresión se mantenía en el tiempo evaluado. Esta sobrexpresión en fases tempranas de la infección podría contribuir a mediar la resistencia a T. paradoxa. En conclusión, los resultados proporcionaron información sobre el proceso de defensa dinámico del híbrido OxG y sugieren que los materiales del híbrido de palma de aceite responden de manera diferente en términos de expresión de la vía fenilpropanoide y proteínas relacionadas con patogénesis para conferir defensa y resistencia a esta enfermedad. (Texto tomado de la fuente)
dc.description.abstractSpear rot disease in oil palm, is caused by the pathogenic fungus Thielaviopsis paradoxa. The OxG hybrid provides a valuable genetic resource for selecting resistant germplasm and for stablish resistance-associated genes to this pathogen. In this study, an OxG hybrid coded 517 was identified as a resistant genotype that limited the colonization of T. paradoxa, while another OxG hybrid coded 485 showed high susceptibility. To understand the OxG hybrid transcriptional response to T. paradoxa infection, these two OxG hybrid materials were inoculated with this pathogen and its transcriptional profile was compared by RNA sequencing at six time points (0, 24, 48, 72, 96 and 120 hpi). To establish the time points, a characterization of the development of the disease was performed and a severity scale was established. 1798 differentially expressed genes (DEG), including 454 up-regulated genes and 86 downregulated genes, were detected in hybrid 517, compared to hybrid 485. The transcription profiles of twenty putative genes related to oil palm defense were measured by reverse transcription and quantitative PCR at the leaves of oil palm hybrids. Genes are involved in the processes of signal perception and transduction, generation and purification of ROS, a pathway related to phenylpropanoid, serine protease inhibitors, transcription factors, phytohormone biosynthesis (AJ and ET) and pathogenesis related proteins. These results show an increase in the expression of these genes within the first 24 hpi in hybrid 517 and that this overexpression was maintained over the evaluated time. This overexpression in the early stages of infection could contribute to mediate resistance to T. paradoxa. In conclusion, the results provided information on the dynamic defense process of the OxG hybrid and suggested that the oil palm hybrid materials respond differently in terms of expression of the phenylpropanoid pathway and pathogenesis-related proteins to confer defense and resistance to this disease.
dc.format.extentxiii, 126 páginas
dc.format.mimetypeapplication/pdf
dc.publisherUniversidad Nacional de Colombia
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/
dc.subject.ddc580 - Plantas::584 - Monocotiledóneas, angiospermas basales, clorantales, magnolias
dc.subject.ddc630 - Agricultura y tecnologías relacionadas::632 - Lesiones, enfermedades, plagas vegetales
dc.subject.ddc630 - Agricultura y tecnologías relacionadas::633 - Cultivos de campo y de plantación
dc.titleAnálisis de la expresión de genes asociados con defensa en el modelo palma de aceite -thielaviopsis paradoxa (de seynes) höhn
dc.typeTrabajo de grado - Doctorado
dc.type.driverinfo:eu-repo/semantics/doctoralThesis
dc.type.versioninfo:eu-repo/semantics/acceptedVersion
dc.publisher.programBogotá - Ciencias - Doctorado en Biotecnología
dc.description.degreelevelDoctorado
dc.description.degreenameDoctor en Biotecnología
dc.identifier.instnameUniversidad Nacional de Colombia
dc.identifier.reponameRepositorio Institucional Universidad Nacional de Colombia
dc.identifier.repourlhttps://repositorio.unal.edu.co/
dc.publisher.departmentObservatorio Astronómico Nacional
dc.publisher.facultyFacultad de Ciencias
dc.publisher.placeBogotá - Colombia
dc.publisher.branchUniversidad Nacional de Colombia - Sede Bogotá
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dc.rights.accessrightsinfo:eu-repo/semantics/openAccess
dc.subject.proposalOil palm OxG hybrid, spear-arrow rot, T. paradoxa, RNASeq, defense response.
dc.subject.proposalHíbrido OxG de palma de aceite
dc.subject.proposalPudrición de flecha
dc.subject.proposalT. paradoxa
dc.subject.proposalRNASeq
dc.subject.proposalRespuesta de defensa
dc.subject.proposalOil palm OxG hybrid
dc.subject.proposalSpear-arrow rot
dc.subject.proposalT. paradoxa
dc.subject.proposalRNASeq
dc.subject.proposalDefense response
dc.title.translatedExpression analysis of genes associated with defense in the model oil palm -thielaviopsis paradoxa (de seynes) höhn
dc.type.coarhttp://purl.org/coar/resource_type/c_db06
dc.type.coarversionhttp://purl.org/coar/version/c_ab4af688f83e57aa
dc.type.contentText
dc.type.redcolhttp://purl.org/redcol/resource_type/TD
oaire.accessrightshttp://purl.org/coar/access_right/c_abf2
oaire.fundernameFondo de Fomento Palmero
dcterms.audience.professionaldevelopmentEstudiantes
dcterms.audience.professionaldevelopmentInvestigadores
dcterms.audience.professionaldevelopmentMaestros
dcterms.audience.professionaldevelopmentPúblico general


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