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Caracterización de la diversidad microbiana asociada al tracto gastrointestinal del Panaque cochliodon (Cucha de ojos azules)
dc.rights.license | Atribución-NoComercial-CompartirIgual 4.0 Internacional |
dc.contributor.advisor | David Ruales, Carlos Arturo |
dc.contributor.advisor | Pardo Carrasco, Sandra Clemencia |
dc.contributor.advisor | Gutiérrez Ramírez, Luz Adriana |
dc.contributor.author | Cano Gil, Juan David |
dc.date.accessioned | 2024-04-16T14:30:17Z |
dc.date.available | 2024-04-16T14:30:17Z |
dc.date.issued | 2024-04-10 |
dc.identifier.uri | https://repositorio.unal.edu.co/handle/unal/85923 |
dc.description | ilustraciones, fotografías, gráficos |
dc.description.abstract | Panaque cochliodon, conocido en Colombia como cucha de ojos azules, es una especie endémica de las cuencas del Cauca y el Magdalena, y está clasificada como vulnerable (A2d) en el Libro Rojo de los Peces de Agua Dulce de Colombia. Este es el primer reporte para Colombia sobre esta especie en medio natural razón por la cual se escogió para este trabajo, además por tener hábitos xilívoros, es decir, que consume madera como principal fuente de alimento para su nutrición, siendo una especie de gran valor biológico para el ecosistema. Se tiene cierto conocimiento sobre su comportamiento básico, adaptación al cautiverio y otras características relacionadas con su alimentación y reproducción, sin embargo, se desconoce por completo su fisiología digestiva y las posibles relaciones simbióticas de los componentes de su microbiota intestinal. En este estudio se realizó la primera caracterización de la microbiota asociada al tracto gastrointestinal de Panaque cochliodon. Para ello, se capturaron y utilizaron tres ejemplares adultos provenientes del río Magdalena, los cuales fueron transportados y sacrificados siguiendo las normas de bienestar animal. Se realizó la disección del tracto intestinal, obteniendo muestras para el aislamiento microbiológico e identificación molecular de los microorganismos cultivables, con el objetivo de obtener información filogenética. Mediante análisis bioinformáticos, se identificaron varios géneros de interés para la producción agropecuaria y de alimentos, como: Bacillus paramycoides, Bacillus velezensis, Bacillus thuringiensis y Lactococcus cremoris. Posteriormente, se realizó un análisis metagenómico utilizando la extracción de ADN de tres secciones intestinales: anterior, media y posterior. El ADN se amplificó mediante PCR y, finalmente, se secuenció utilizando el gen ADNr 16S bacteriano. Como resultado, se identificaron todas las comunidades bacterianas que forman parte de la microbiota intestinal, con una presencia predominante de Proteobacteria, Actinobacteriota, Firmicutes, Bdellovibrionota, Planctomycetes, Verrucomicrobiota, Spirochaetota y Cyanobacteria. El análisis metagenómico reveló diferencias funcionales entre las comunidades y la abundancia relativa de la microbiota intestinal. (Tomado de la fuente) |
dc.description.abstract | Panaque cochliodon, known in Colombia as blue-eyed pleco,' is an endemic species in the Cauca and Magdalena river basins, classified as vulnerable (A2d) in the Red Book of Freshwater Fish of Colombia. This is the first report for Colombia on this species in its natural habitat, which is why it was chosen for this study. Additionally, due to its xylophagous habits—meaning it primarily consumes wood as a source of nutrition—it holds significant biological value for the ecosystem. While there is some knowledge about its basic behavior, adaptation to captivity, and other characteristics related to its feeding and reproduction, its digestive physiology and potential symbiotic relationships within its intestinal microbiota remain completely unknown. This study conducted the first characterization of the microbiota associated with the gastrointestinal tract of Panaque cochliodon. Three adult specimens from the Magdalena River were captured, transported, and sacrificed following animal welfare standards. Intestinal dissection was performed, obtaining samples for microbiological isolation and molecular identification of cultivable microorganisms to gather phylogenetic information. Through bioinformatic analysis, several genera of interest for agricultural and food production were identified, including Bacillus paramycoides, Bacillus velezensis, Bacillus thuringiensis, and Lactococcus cremoris. Subsequently, a metagenomic analysis was conducted using DNA extraction from three intestinal sections: anterior, middle, and posterior. DNA was amplified via PCR and sequenced using the bacterial 16S rRNA gene. As a result, all bacterial communities forming part of the intestinal microbiota were identified, with a predominant presence of Proteobacteria, Actinobacteriota, Firmicutes, Bdellovibrionota, Planctomycetes, Verrucomicrobiota, Spirochaetota, and Cyanobacteria. The metagenomic analysis revealed functional differences between communities and the relative abundance of the intestinal microbiota |
dc.format.extent | 97 páginas |
dc.format.mimetype | application/pdf |
dc.language.iso | spa |
dc.publisher | Universidad Nacional de Colombia |
dc.rights.uri | http://creativecommons.org/licenses/by-nc/4.0/ |
dc.subject.ddc | 590 - Animales |
dc.subject.ddc | 570 - Biología |
dc.subject.ddc | 570 - Biología::573 - Sistemas fisiológicos específicos en animales, histología regional y fisiología en los animales |
dc.title | Caracterización de la diversidad microbiana asociada al tracto gastrointestinal del Panaque cochliodon (Cucha de ojos azules) |
dc.type | Trabajo de grado - Maestría |
dc.type.driver | info:eu-repo/semantics/masterThesis |
dc.type.version | info:eu-repo/semantics/acceptedVersion |
dc.publisher.program | Medellín - Ciencias Agrarias - Maestría en Ciencias Agrarias |
dc.contributor.researchgroup | Producción, Desarrollo y Transformación Agropecuaria (GIPDTA). |
dc.coverage.country | Colombia |
dc.description.degreelevel | Maestría |
dc.description.degreename | Magister en Ciencias Agrarias |
dc.description.methods | Se capturaron y utilizaron tres ejemplares adultos provenientes del río Magdalena, los cuales fueron transportados y sacrificados siguiendo las normas de bienestar animal. Se realizó la disección del tracto intestinal, obteniendo muestras para el aislamiento microbiológico e identificación molecular de los microorganismos cultivables, con el objetivo de obtener información filogenética. Mediante análisis bioinformáticos, se identificaron varios géneros de interés para la producción agropecuaria y de alimentos, como: Bacillus paramycoides, Bacillus velezensis, Bacillus thuringiensis y Lactococcus cremoris. Posteriormente, se realizó un análisis metagenómico utilizando la extracción de ADN de tres secciones intestinales: anterior, media y posterior. El ADN se amplificó mediante PCR y, finalmente, se secuenció utilizando el gen ADNr 16S bacteriano. Como resultado, se identificaron todas las comunidades bacterianas que forman parte de la microbiota intestinal, con una presencia predominante de Proteobacteria, Actinobacteriota, Firmicutes, Bdellovibrionota, Planctomycetes, Verrucomicrobiota, Spirochaetota y Cyanobacteria. El análisis metagenómico reveló diferencias funcionales entre las comunidades y la abundancia relativa de la microbiota intestinal. |
dc.description.researcharea | Biotecnología y producción agropecuaria |
dc.identifier.instname | Universidad Nacional de Colombia |
dc.identifier.reponame | Repositorio Institucional Universidad Nacional de Colombia |
dc.identifier.repourl | https://repositorio.unal.edu.co/ |
dc.publisher.faculty | Facultad de Ciencias Agrarias |
dc.publisher.place | Medellín, Colombia |
dc.publisher.branch | Universidad Nacional de Colombia - Sede Medellín |
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dc.rights.accessrights | info:eu-repo/semantics/openAccess |
dc.subject.agrovoc | Especies endémicas - Colombia |
dc.subject.agrovoc | Especies vulnerables - Colombia |
dc.subject.agrovoc | Peces de agua dulce - Colombia |
dc.subject.agrovoc | Panaque cochliodon |
dc.subject.agrovoc | Nutrición animal |
dc.subject.agrovoc | Flora microbiana |
dc.subject.agrovoc | Microbiomas |
dc.subject.lemb | Peces de agua dulce - Digestión |
dc.subject.proposal | Panaque cochliodon |
dc.subject.proposal | cucha de ojos azules |
dc.subject.proposal | microbiota intestinal |
dc.subject.proposal | Metagenómica |
dc.subject.proposal | gen ADN 16S |
dc.subject.proposal | blue-eyed pleco |
dc.subject.proposal | metagenomics |
dc.subject.proposal | bacterial 16S rRNA |
dc.subject.proposal | intestinal microbiota |
dc.title.translated | Characterization of the microbial diversity associated with the gastrointestinal tract of the Panaque cochliodon (Blue-eyed Panaque) |
dc.type.coar | http://purl.org/coar/resource_type/c_bdcc |
dc.type.coarversion | http://purl.org/coar/version/c_ab4af688f83e57aa |
dc.type.content | DataPaper |
dc.type.content | Image |
dc.type.content | Text |
dc.type.redcol | http://purl.org/redcol/resource_type/TM |
oaire.accessrights | http://purl.org/coar/access_right/c_abf2 |
oaire.awardtitle | Identificación molecular del microbioma en el tracto gastrointestinal de la especie Panaque cochliodon (cucha de ojos azules) |
oaire.fundername | Corporación Universitaria Lasallista |
dcterms.audience.professionaldevelopment | Estudiantes |
dcterms.audience.professionaldevelopment | Investigadores |
dcterms.audience.professionaldevelopment | Maestros |
dc.description.curriculararea | Producción Agraria Sostenible.Sede Medellín |
dc.contributor.orcid | Cano Gil, Juan David (0000000245747509) |
dc.contributor.cvlac | Cano Gil, Juan David (0001821334) |
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