Aproximación transcriptómica y fisiológica para el estudio de los mecanismos moleculares involucrados en la interacción clavel (Dianthus caryophyllus L.) – Fusarium oxysporum f. sp. dianthi

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dc.contributor.advisorArdila Barrantes, Harold Duban
dc.contributor.advisorPinzon Velasco, Andrés Mauricio
dc.contributor.authorBustos Caro, Eliana
dc.contributor.orcidBustos Caro, Eliana [0009-0005-1248-6655]spa
dc.contributor.researchgroupEstudio de Actividades Metabolicas Vegetalesspa
dc.date.accessioned2024-07-03T18:09:06Z
dc.date.available2024-07-03T18:09:06Z
dc.date.issued2022-10-07
dc.descriptionilustraciones (principalmente a color), diagramas, fotografíasspa
dc.description.abstractVascular wilting caused by Fusarium oxysporum f. sp. dianthi (Fod) in carnations is undoubtedly one of the diseases with the greatest impact on the world flower sector. The molecular study of this plant-pathogen interaction will make it possible to propose new strategies for its early diagnosis and control in crops, and provide tools for the genetic design of varieties resistant to the pathogen. This study presents the first joint study of physiological parameters and comparative transcriptomics using RNAseq in this pathosystem. From the physiological approach, it was found that the mechanisms displayed by the plants of the resistant variety under study included stomatal closure without affecting the production of total chlorophyll, photochemical efficiency of photosystem II, or biomass production. Likewise, it was found that, at least in the varieties studied, leaf temperature can be postulated as an indicator for early diagnosis of the disease. On the other hand, the molecular mechanisms associated with resistance against Fod and displayed by the roots at early times include the activation of genes that code for potential RGA resistance proteins, oxidative burst, cell wall biogenesis, biosynthesis of specialized metabolites, chloroplast metabolism, and, in general, the transcriptional regulation related to stress response genes, defense response, and, to a lesser extent, some genes that participate in the response to osmotic stress, as well as some genes of hormonal pathways. In general, the transcriptional response, which was partially validated by RT-qPCR, is complex and shows components that are reported for the first time in the carnation response to the causal pathogen of vascular wilting.eng
dc.description.abstractEl marchitamiento vascular causado por Fusarium oxysporum f. sp. dianthi (Fod) en clavel, es sin duda, una de las enfermedades con mayor impacto en el sector floricultor mundial. El estudio molecular de esta interacción planta-patógeno permitirá plantear nuevas estrategias para su diagnóstico temprano, control en los cultivos y brindar herramientas para el diseño genético de variedades resistentes al patógeno. En esta investigación se presenta el primer estudio conjunto de parámetros fisiológicos y de transcriptómica comparativa usando RNAseq en este patosistema. Desde el abordaje fisiológico, se encontró que los mecanismos desplegados por las plantas de la variedad resistente en estudio, incluyeron cierre estomático sin afectación en la producción de clorofilas totales, ni en la eficiencia fotoquímica del fotosistema II o la producción de biomasa. Igualmente, se encontró que, al menos en las variedades estudiadas, la temperatura foliar puede postularse como un indicador de diagnóstico temprano de la enfermedad. Por otra parte, los mecanismos moleculares asociados a resistencia contra Fod y desplegados por las raíces a tiempos tempranos, incluyen entre otros, la activación de genes que codifican para potenciales proteínas de resistencia RGA, estallido oxidativo, biogénesis de pared celular, biosíntesis de metabolitos especializados y metabolismo del cloroplasto, así como en general, la regulación transcripcional relacionada con genes de respuesta a estrés, respuesta de defensa y en menor medida algunos genes que participan de la respuesta a estrés osmótico, así como algunos genes de las rutas hormonales. En general la respuesta transcripcional, que fue parcialmente validada por RT-qPCR, es compleja y evidencia componentes que son reportados por primera vez en la respuesta del clavel al patógeno causal del marchitamiento vascular (Texto tomado de la fuente).spa
dc.description.degreelevelDoctoradospa
dc.description.degreenameDoctor en Ciencias - Bioquímicaspa
dc.description.methodsEn esta investigación se presenta el primer estudio conjunto de parámetros fisiológicos y de transcriptómica comparativa usando RNAseq en este patosistema. Desde el abordaje fisiológico, se encontró que los mecanismos desplegados por las plantas de la variedad resistente en estudio, incluyeron cierre estomático sin afectación en la producción de clorofilas totales, ni en la eficiencia fotoquímica del fotosistema II o la producción de biomasa. Igualmente, se encontró que, al menos en las variedades estudiadas, la temperatura foliar puede postularse como un indicador de diagnóstico temprano de la enfermedad. Por otra parte, los mecanismos moleculares asociados a resistencia contra Fod y desplegados por las raíces a tiempos tempranos, incluyen entre otros, Los análisis con RNAseq permitieron encontrar la activación de genes que codifican para potenciales proteínas de resistencia RGA, estallido oxidativo, biogénesis de pared celular, biosíntesis de metabolitos especializados y metabolismo del cloroplasto, así como en general, la regulación transcripcional relacionada con genes de respuesta a estrés, respuesta de defensa y en menor medida algunos genes que participan de la respuesta a estrés osmótico, así como algunos genes de las rutas hormonales. En general la respuesta transcripcional, que fue parcialmente validada por RT-qPCR, es compleja y evidencia componentes que son reportados por primera vez en la respuesta del clavel al patógeno causal del marchitamiento vascular.spa
dc.description.researchareaBioquímica de las interacciones Hospedero - Patógenospa
dc.description.sponsorshipConvocatoria Doctorados Nacionales, número 757 – 2016 de Colciencias. Ahora Min-Cienciasspa
dc.description.sponsorshipFlorval sede QFC S.A.S, Gachancipá, Cundinamarca- Colombiaspa
dc.format.extentxiv, 211 páginas, + anexosspa
dc.format.mimetypeapplication/pdfspa
dc.identifier.instnameUniversidad Nacional de Colombiaspa
dc.identifier.reponameRepositorio Institucional Universidad Nacional de Colombiaspa
dc.identifier.repourlhttps://repositorio.unal.edu.co/spa
dc.identifier.urihttps://repositorio.unal.edu.co/handle/unal/86376
dc.language.isospaspa
dc.publisherUniversidad Nacional de Colombiaspa
dc.publisher.branchUniversidad Nacional de Colombia - Sede Bogotáspa
dc.publisher.facultyFacultad de Cienciasspa
dc.publisher.placeBogotá, Colombiaspa
dc.publisher.programBogotá - Ciencias - Doctorado en Ciencias - Bioquímicaspa
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dc.relation.referencesZhao, C., Avci, U., Grant, E. H., Haigler, C. H., & Beers, E. P. (2008). XND1, a member of the NAC_negatively regulates lignocellulose synthesis and PCD in xylem.pdf. The Plant Journal, 53, 425–436. https://doi.org/https://doi.org/10.1111/j.1365-313X.2007.03350.xspa
dc.relation.referencesZhao, M., Ji, H.-M., Gao, Y., Cao, X.-X., Mao, H.-Y., Liu, P., & Ouyang, S.-Q. (2017). Comparative transcriptome profiling of resistance to Fusarium oxysporum infection between resistant and susceptible tomato. BioRxiv, on line, 1–25. https://doi.org/http://dx.doi.org/10.1101/116988spa
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dc.relation.referencesZhou, R., Zhu, T., Han, L., Liu, M., Xu, M., Liu, Y., Han, D., Qiu, D., Gong, Q., & Liu, X. (2017). The asparagine-rich protein NRP interacts with the Verticillium effector PevD1 and regulates the subcellular localization of cryptochrome 2. Journal of Experimental Botany, 68(13), 3427–3440. https://doi.org/10.1093/jxb/erx192spa
dc.rights.accessrightsinfo:eu-repo/semantics/openAccessspa
dc.rights.licenseAtribución-NoComercial-SinDerivadas 4.0 Internacionalspa
dc.subject.ddc570 - Biología::572 - Bioquímicaspa
dc.subject.lembClavelesspa
dc.subject.lembFisiología vegetalspa
dc.subject.lembPlant physiologyeng
dc.subject.proposalFusarium oxysporumspa
dc.subject.proposalTranscriptómicaspa
dc.subject.proposalResistencia vegetalspa
dc.subject.proposalPlant Physiologyeng
dc.subject.proposalRNAseqeng
dc.subject.proposalClavelspa
dc.subject.wikidataFusarium oxysporum
dc.subject.wikidataTranscriptomicseng
dc.subject.wikidataTecnologías de transcriptómicaspa
dc.subject.wikidataRNA sequencing
dc.subject.wikidataRNA-Seq
dc.titleAproximación transcriptómica y fisiológica para el estudio de los mecanismos moleculares involucrados en la interacción clavel (Dianthus caryophyllus L.) – Fusarium oxysporum f. sp. dianthispa
dc.title.translatedTranscriptomic and physiological approach for the study of the molecular mechanisms involved in the carnation (Dianthus caryophyllus L.) – Fusarium oxysporum f. sp. dianthieng
dc.typeTrabajo de grado - Doctoradospa
dc.type.coarhttp://purl.org/coar/resource_type/c_db06spa
dc.type.coarversionhttp://purl.org/coar/version/c_ab4af688f83e57aaspa
dc.type.contentTextspa
dc.type.driverinfo:eu-repo/semantics/doctoralThesisspa
dc.type.redcolhttp://purl.org/redcol/resource_type/TDspa
dc.type.versioninfo:eu-repo/semantics/acceptedVersionspa
dcterms.audience.professionaldevelopmentBibliotecariosspa
dcterms.audience.professionaldevelopmentConsejerosspa
dcterms.audience.professionaldevelopmentEstudiantesspa
dcterms.audience.professionaldevelopmentGrupos comunitariosspa
dcterms.audience.professionaldevelopmentInvestigadoresspa
dcterms.audience.professionaldevelopmentMaestrosspa
dcterms.audience.professionaldevelopmentMedios de comunicaciónspa
dcterms.audience.professionaldevelopmentPadres y familiasspa
dcterms.audience.professionaldevelopmentPersonal de apoyo escolarspa
dcterms.audience.professionaldevelopmentProveedores de ayuda financiera para estudiantesspa
dcterms.audience.professionaldevelopmentPúblico generalspa
dcterms.audience.professionaldevelopmentReceptores de fondos federales y solicitantesspa
dcterms.audience.professionaldevelopmentResponsables políticosspa
oaire.accessrightshttp://purl.org/coar/access_right/c_14cbspa
oaire.awardtitleEstudio de fenómenos bioquímicos del apoplasto del clavel (Dianthus caryophyllus) durante su interacción con Fusarium oxysporum f. sp dianthispa
oaire.awardtitleEstudio del uso de elicitores de origen biótico en el clavel (Dianthus caryophyllus) para el control del marchitamiento vascular: una alternativa al uso de fungicidas de origen sintéticospa
oaire.fundernameMinCiencias (antes ColCiencias)spa

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