Mapeo genético asociativo de caracteres agronómicos en accesiones de yuca (Manihot esculenta Crantz)

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dc.contributor.advisorLópez Álvarez, Diana Carolina
dc.contributor.advisorGimode, Winnie
dc.contributor.authorMarín Lenis, Diana Victoria
dc.contributor.orcid0000-0002-8990-3497spa
dc.contributor.projectleaderLuis Augusto Becerra Lopez-Lavalle
dc.date.accessioned2025-01-23T19:08:54Z
dc.date.available2025-01-23T19:08:54Z
dc.date.issued2025-06-06
dc.descriptionIlustraciones, fotografías, tablasspa
dc.description.abstractLa biotecnología cumple un papel de gran importancia en el mejoramiento de cultivos, para Manihot esculenta comúnmente conocida como yuca, los avances en mejoramiento genético en plantas han ido incrementando, a la fecha, se han realizado estudios de asociación de genoma completo (GWAS), para caracterizar la diversidad fenotípica del germoplasma con respecto a varios caracteres agronómicos. Por ello y basándose en estudios anteriores el objetivo de esta investigación fue identificar marcadores tipo SNPs (Polimorfismo puntual o variación en la secuencia de DNA) asociados a características de interés agronómico como porcentaje de materia seca gravimétrica (%MSG), tipo de planta (EP) y rendimiento t/ha (Rend) en un panel de 399 accesiones de yuca. Los datos fueron analizados a través de la metodología GWAS, el control de calidad de los datos se llevó a cabo utilizando GAPIT mediante el paquete lme4 en el software R. 4. Se identificaron 9 SNPs en rendimiento, 19 en porcentaje de materia seca, y ningún SNPs para tipo de planta, cada SNPs fue anotado e investigado en cada una de las plataformas bioinformáticas (NCBI, Panther, gramene, Uniprot, Interpro y Phytozome) para correlacionarlos directamente con los genes y proteínas codificantes, para posteriormente relacionarlas con las características de interés agronómico y más adelanté ser tenidas en cuenta en futuras investigaciones y proyectos en los programas de mejoramiento del programa de yuca en CIAT. (Texto tomado de la fuente)spa
dc.description.abstractBiotechnology plays a crucial role in crop improvement, particularly for Manihot esculenta, commonly known as cassava. Advances in genetic improvement in plants have been steadily increasing. To date, genome-wide association studies (GWAS) have been conducted to characterize the phenotypic diversity of germplasm associated with various agronomic traits. Therefore, building on previous studies, the objective of this research was to identify Single Nucleotide Polymorphism (SNP) markers associated with agronomically significant traits such as dry matter content, plant type (EP), and yield in a panel of 399 cassava accessions. Data were analyzed through GWAS methodology, and data quality control was performed using GAPIT through the lme4 package in R software. Nine SNPs were identified for yield, nineteen for dry matter percentage, and no SNPs for plant type. Each SNP was annotated and investigated using various bioinformatics platforms (NCBI, Panther, Gramene, Uniprot, Interpro, and Phytozome) o directly correlate them with the coding genes and proteins. Subsequently, these correlations were linked to the agronomically significant traits and will be considered in future research and projects within the cassava improvement programs at CIAT.eng
dc.description.curricularareaCiencias Agropecuarias.Sede Palmiraspa
dc.description.degreelevelMaestríaspa
dc.description.degreenameMagíster en Ciencias Biológicasspa
dc.description.methodsEl material vegetal se obtuvo de la colección del banco de germoplasma de CIAT, específicamente de un panel de diversidad genética proveniente de diferentes zonas tropicales (Tabla 1), selección que se fue depurando a través de los años de acuerdo con la disponibilidad y estudios que se fueron efectuando para conocer calidad, procedencia y contribución en los materiales de mejoramiento. Estas accesiones fueron sembradas anualmente y cosechadas a los 10 meses después de la siembra durante dos ciclos de cosecha. Cada unidad experimental se basó en asignar una parcela a una accesión específica de yuca seleccionada para el estudio. Cada parcela estaba compuesta por un total de 16 plantas, distribuidas a una distancia de 40 cm dentro del surco y 60 cm. Se tuvieron en cuenta datos históricos de un panel de diversidad del programa de mejoramiento de yuca del CIAT y datos de los ensayos de diversidad que se encontraban en vigencia. La evaluación se realizó planta por planta, donde se evaluaron 18 variables en un transcurso de siete años consecutivos. Posteriormente, se seleccionaron las variables de interés de acuerdo con la agrupación del análisis estadístico y el interés agronómico en el programa de mejoramientospa
dc.description.researchareaBiotecnología Vegetalspa
dc.format.extentxv, 94 páginas + anexosspa
dc.format.mimetypeapplication/pdfspa
dc.identifier.instnameUniversidad Nacional de Colombiaspa
dc.identifier.reponameRepositorio Institucional Universidad Nacional de Colombiaspa
dc.identifier.repourlhttps://repositorio.unal.edu.co/spa
dc.identifier.urihttps://repositorio.unal.edu.co/handle/unal/87359
dc.language.isospaspa
dc.publisherUniversidad Nacional de Colombiaspa
dc.publisher.branchUniversidad Nacional de Colombia - Sede Palmiraspa
dc.publisher.facultyFacultad de Ciencias Agropecuariasspa
dc.publisher.placePalmira, Valle del Cauca, Colombiaspa
dc.publisher.programPalmira - Ciencias Agropecuarias - Maestría en Ciencias Biológicasspa
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dc.rights.accessrightsinfo:eu-repo/semantics/closedAccessspa
dc.rights.licenseAtribución-NoComercial 4.0 Internacionalspa
dc.rights.urihttp://creativecommons.org/licenses/by-nc/4.0/spa
dc.subject.agrovocMapeo de asociación
dc.subject.agrovocAssociation mapping
dc.subject.agrovocTécnica genética
dc.subject.agrovocGenetic techniques
dc.subject.agrovocGenómica
dc.subject.agrovocGenomics
dc.subject.agrovocMejoramiento genético
dc.subject.agrovocGenetic improvement
dc.subject.agrovocMarcador genético
dc.subject.agrovocGenetic markers
dc.subject.agrovocFenotipado
dc.subject.agrovocPhénotypage
dc.subject.ddc630 - Agricultura y tecnologías relacionadasspa
dc.subject.proposalYucaspa
dc.subject.proposalGWASspa
dc.subject.proposalSNPsspa
dc.subject.proposalPolimorfismospa
dc.subject.proposalCassavaeng
dc.subject.proposalPolymorphismeng
dc.titleMapeo genético asociativo de caracteres agronómicos en accesiones de yuca (Manihot esculenta Crantz)spa
dc.title.translatedAssociative genetic mapping of agronomic traits in accessions of cassava (Manihot esculenta Crantz)eng
dc.typeTrabajo de grado - Maestríaspa
dc.type.coarhttp://purl.org/coar/resource_type/c_bdccspa
dc.type.coarversionhttp://purl.org/coar/version/c_ab4af688f83e57aaspa
dc.type.contentTextspa
dc.type.driverinfo:eu-repo/semantics/masterThesisspa
dc.type.redcolhttp://purl.org/redcol/resource_type/TMspa
dc.type.versioninfo:eu-repo/semantics/acceptedVersionspa
dcterms.audience.professionaldevelopmentInvestigadoresspa
oaire.accessrightshttp://purl.org/coar/access_right/c_14cbspa
oaire.fundernameAlianza Bioversity-CIATspa

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